| ... | ... | @@ -233,9 +233,12 @@ The [assembly Snakefile](https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidr |
|
|
|
|
|
|
|
#### Remove unaligned sequence records
|
|
|
|
|
|
|
|
[remove_unaligned](https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/02_assembly/rules/remove_unaligned.smk):
|
|
|
|
[remove_unaligned](https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/02_assembly/rules/remove_unaligned.smk): merged sequence tagged as "unaligned" are removed
|
|
|
|
|
|
|
|
* results/02_assembly/02_remove_unaligned/`run`
|
|
|
|
* input:
|
|
|
|
* results/02_assembly/01_illuminapairedend/`run`.fastq: merged sequences fastq file
|
|
|
|
* output:
|
|
|
|
* results/02_assembly/02_remove_unaligned/`run`.ali.fastq: aligned and merged sequences fastq file
|
|
|
|
|
|
|
|
|
|
|
|
### 3 Demultiplexing
|
| ... | ... | |
