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Update Reference authored by peguerin's avatar peguerin
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Reference.md
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...@@ -83,7 +83,6 @@ graph TD; ...@@ -83,7 +83,6 @@ graph TD;
r5(dereplicate_samples)-->r6(goodlength_samples); r5(dereplicate_samples)-->r6(goodlength_samples);
r6-->r7(clean_pcrerr_samples); r6-->r7(clean_pcrerr_samples);
r7-->r8(rm_internal_samples); r7-->r8(rm_internal_samples);
click r5 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/04_filter_samples/rules/dereplicate_samples.smk"; click r5 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/04_filter_samples/rules/dereplicate_samples.smk";
click r6 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/04_filter_samples/rules/goodlength_samples.smk"; click r6 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/04_filter_samples/rules/goodlength_samples.smk";
click r7 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/04_filter_samples/rules/clean_pcrerr_samples.smk"; click r7 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/04_filter_samples/rules/clean_pcrerr_samples.smk";
...@@ -128,13 +127,13 @@ graph TD; ...@@ -128,13 +127,13 @@ graph TD;
click id0a "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/resources/test/all_samples.tsv"; click id0a "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/resources/test/all_samples.tsv";
click id0s "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/tree/master/resources/test/sample_description"; click id0s "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/tree/master/resources/test/sample_description";
click id2 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/tree/master/results/02_assembly/02_remove_unaligned";
click id3 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/tree/master/results/03_demultiplex/02_raw";
click id4 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/tree/master/results/04_filter_samples/04_filtered";
click id5 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/tree/master/results/05_assignment/01_runs";
click id6 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/tree/master/results/06_final_tables";
click s0 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/01_settings/readwrite_rapidrun_demultiplexing.py"; click s0 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/01_settings/readwrite_rapidrun_demultiplexing.py";
click s1 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/02_assembly/Snakefile";
click s2 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/03_demultiplex/Snakefile";
click s3 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/04_filter_samples/Snakefile";
click s4 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/05_assignment/Snakefile";
class id0a,id0b,id0c,id0s Configurer; class id0a,id0b,id0c,id0s Configurer;
class s0,s1,s2,s3,s4,g1,g2,g3,g4 Snakefile; class s0,s1,s2,s3,s4,g1,g2,g3,g4 Snakefile;
......