Reference.md

@@ -72,8 +72,12 @@ graph TD;
   opt1 --> choice1a[YES]
   opt1 --> choice1b[NO]
 
+  choice1b --> r1(illuminapairedend);
+  
   choice1a --> r1a(split_fastq);
-  choice1b --> r1
+  r1a --> id1a[`run`_`chunk` .fastq files]
+  id1a --> r1
+  
 
   r1-->r2(remove_unaligned);
   click r1 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/02_assembly/rules/illuminapairedend.smk";