Reference.md

@@ -152,23 +152,6 @@ graph TD;
 
 ## Description
 
-Summary, inputs, outputs of scripts. The scripts are ordered by steps
-
-* **01_settings** produces the table to define wildcards
-* **02_assembly** merges `run` paired-end .fastq files
-* **03_demultiplex** generates `projet`/`marker`/`run`/`sample` .fasta files from `run` merged .fastq files 
-* **04_filter_samples** filters `projet`/`marker`/`run`/`sample` .fasta files
-* We concatenate  `projet`/`marker`/`run`/`sample` .fasta files into `projet`/`marker`/`run` .fasta files
-* **05_assignment** produces `projet`/`marker`/`run` species occurence table files
-
-0. Configuration
-1. Settings
-2. Assembly
-3. Demultiplexing
-4. Filtering
-5. Taxonomic assignment
-
-
 ### 0. Configuration
 
 The [config file](config/) defines a dictionary of configuration parameters and their values. These values will be used by the workflows.