Reference.md

@@ -76,8 +76,8 @@ graph TD;
   
   choice1a --> r1a(split_fastq);
   r1a --> id1a[`run`_`chunk` .fastq files]
-  id1a --> r1
-  
+  id1a --> r1a(chunk_illuminapairedend);
+  r1a --> r2(remove_unaligned);
 
   r1-->r2(remove_unaligned);
   click r1 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/02_assembly/rules/illuminapairedend.smk";
@@ -150,9 +150,9 @@ graph TD;
   click s3 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/04_filter_samples/Snakefile";
   click s4 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/05_assignment/Snakefile";
   
-  class id0a,id0b,id0c,id0s Configurer;
+  class opt1,choicea,choiceb,id0a,id0b,id0c,id0s Configurer;
   class s0,s1,s2,s3,s4,g1,g2,g3,g4 Snakefile;
-  class id1,id2,id3,id4,id5,id6,bdr Fichier; 
+  class id1,id1a,id2,id3,id4,id5,id6,bdr Fichier; 
 
 
 ```