Reference.md

@@ -69,16 +69,13 @@ graph TD;
 
   subgraph g1[assembly]
   
-  opt1 --> choice1a[YES]
-  opt1 --> choice1b[NO]
-
+  opt1 --> choice1a[YES];
+  opt1 --> choice1b[NO];
   choice1b --> r1(illuminapairedend);  
-  
   choice1a --> r1a(split_fastq);
   r1a --> id1a[`run`_`chunk` .fastq files]
   id1a --> r1a(chunk_illuminapairedend);
   r1a --> r2(remove_unaligned);
-
   r1-->r2(remove_unaligned);
   click r1 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/02_assembly/rules/illuminapairedend.smk";
   click r2 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/02_assembly/rules/remove_unaligned.smk";
@@ -150,7 +147,7 @@ graph TD;
   click s3 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/04_filter_samples/Snakefile";
   click s4 "https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_obitools/-/blob/master/05_assignment/Snakefile";
   
-  class opt1,choicea,choiceb,id0a,id0b,id0c,id0s Configurer;
+  class opt1,choice1a,choice1b,id0a,id0b,id0c,id0s Configurer;
   class s0,s1,s2,s3,s4,g1,g2,g3,g4 Snakefile;
   class id1,id1a,id2,id3,id4,id5,id6,bdr Fichier;