Skip to content

GitLab

  • Menu
Projects Groups Snippets
    • Loading...
  • Help
    • Help
    • Support
    • Community forum
    • Submit feedback
    • Contribute to GitLab
  • Sign in
  • snakemake_rapidrun_swarm snakemake_rapidrun_swarm
  • Project information
    • Project information
    • Activity
    • Labels
    • Planning hierarchy
    • Members
  • Repository
    • Repository
    • Files
    • Commits
    • Branches
    • Tags
    • Contributors
    • Graph
    • Compare
  • Issues 12
    • Issues 12
    • List
    • Boards
    • Service Desk
    • Milestones
  • Merge requests 0
    • Merge requests 0
  • CI/CD
    • CI/CD
    • Pipelines
    • Jobs
    • Schedules
  • Deployments
    • Deployments
    • Environments
    • Releases
  • Monitor
    • Monitor
    • Incidents
  • Packages & Registries
    • Packages & Registries
    • Container Registry
  • Analytics
    • Analytics
    • Value stream
    • CI/CD
    • Repository
  • Wiki
    • Wiki
  • Snippets
    • Snippets
  • Activity
  • Graph
  • Create a new issue
  • Jobs
  • Commits
  • Issue Boards
Collapse sidebar
  • edna
  • snakemake_rapidrun_swarmsnakemake_rapidrun_swarm
  • Issues

  • Open 12
  • Closed 24
  • All 36
New issue
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title
  • remove run or projet or sample using a file
    #1 · created Feb 05, 2020 by peguerin   enhancement
    • CLOSED
    • 1
    updated Feb 06, 2020
  • demultiplexing steps: qual files
    #2 · created Feb 05, 2020 by peguerin   bug
    • CLOSED
    • 4
    updated Feb 06, 2020
  • Issue when running the pipeline on santamarta
    #3 · created Feb 12, 2020 by vmarques   bug
    • CLOSED
    • 1
    • 6
    updated Jan 19, 2021
  • Ajouter base de ref custom
    #4 · created Feb 13, 2020 by vmarques   enhancement
    • CLOSED
    • 0
    updated Jun 04, 2021
  • Change name files in 06_ folder
    #5 · created Apr 16, 2020 by vmarques   enhancement
    • CLOSED
    • 6
    updated Jan 20, 2021
  • Erreur merging guadeloupe
    #6 · created Apr 17, 2020 by vmarques   bug
    • CLOSED
    • 5
    updated Oct 09, 2020
  • Erreur lancement clustering
    #7 · created Apr 24, 2020 by vmarques   bug
    • CLOSED
    • 5
    updated Apr 28, 2020
  • Documentation for singularity images
    #8 · created Jul 07, 2020 by vmarques   documentation
    • 0
    updated Jan 19, 2021
  • Ease the data download
    #9 · created Oct 09, 2020 by vmarques   enhancement
    • CLOSED
    • 1
    updated Jan 19, 2021
  • Correct core usage demultiplex
    #10 · created Dec 08, 2020 by vmarques   bug
    • 2
    updated Jan 11, 2021
  • Re-write OTU_ py file python3
    #11 · created Dec 16, 2020 by vmarques   bug
    • CLOSED
    • 1
    • 1
    updated Jan 19, 2021
  • Simplify data export
    #12 · created Dec 18, 2020 by vmarques   enhancement
    • CLOSED
    • 1
    updated Jan 20, 2021
  • add benchmarks
    #13 · created Jan 12, 2021 by peguerin   enhancement
    • 0
    updated Jan 12, 2021
  • add test unit
    #14 · created Jan 12, 2021 by peguerin   enhancement
    • 4
    updated Jan 19, 2021
  • subworkflow
    #15 · created Jan 12, 2021 by peguerin   enhancement
    • CLOSED
    • 0
    updated Jan 19, 2021
  • projetmarker snakemake a un message warning à verifier
    #16 · created Jan 19, 2021 by peguerin   bug
    • CLOSED
    • 1
    updated Jun 04, 2021
  • CLASSIC mode confuse {marker} and {run} wildcards
    #17 · created Jan 19, 2021 by peguerin   bug
    • CLOSED
    • 0
    updated Jan 19, 2021
  • Installation instruction
    #18 · created Jan 19, 2021 by peguerin   documentation
    • CLOSED
    • 1
    updated Jun 21, 2021
  • Test instruction
    #19 · created Jan 19, 2021 by peguerin   documentation
    • CLOSED
    • 1
    updated Jun 21, 2021
  • CLASSIC mode tutorial
    #20 · created Jan 19, 2021 by peguerin   documentation
    • 1
    updated Nov 22, 2021
  • RAPIDRUN mode tutorial
    #21 · created Jan 19, 2021 by peguerin   documentation
    • 0
    updated Jan 19, 2021
  • deploy the workflow on ELIXIR cloud VM
    #22 · created Jan 19, 2021 by peguerin   enhancement
    • 0
    updated Jan 19, 2021
  • run snakemake on cluster Sun Grid Engine MBB
    #23 · created Jan 19, 2021 by peguerin   enhancement
    • 0
    updated Jan 19, 2021
  • probleme demultiplexing
    #24 · created Feb 01, 2021 by peguerin   bug
    • CLOSED
    • 0
    updated Feb 11, 2021
  • error rule duplicate samples
    #25 · created Feb 10, 2021 by vmarques   bug
    • CLOSED
    • 4
    updated Feb 22, 2021
  • soigner la presentation et la doc
    #26 · created Feb 11, 2021 by peguerin   documentation
    • CLOSED
    • 2
    updated Jun 04, 2021
  • fastqc step
    #27 · created Feb 19, 2021 by peguerin   enhancement
    • CLOSED
    • 0
    updated Feb 23, 2021
  • error running one project
    #28 · created Feb 19, 2021 by vmarques   bug
    • CLOSED
    • 3
    updated Feb 22, 2021
  • error empty files all.fasta step 14 & 15
    #29 · created Feb 22, 2021 by vmarques   bug
    • 1
    updated Feb 22, 2021
  • error when running pipeline project
    #31 · created Feb 27, 2021 by vmarques   bug
    • CLOSED
    • 6
    updated Jun 04, 2021
  • prepare spygen file - ameliorations   8 of 9 tasks completed
    #32 · created Apr 21, 2021 by vmarques   enhancement
    • 4
    updated Apr 22, 2021
  • Add multicore option for demultiplexing
    #33 · created Jun 04, 2021 by vmarques   enhancement
    • CLOSED
    • 4
    updated Jun 04, 2021
  • simplify workflow to have less steps and less heavy intermediate results   2 of 4 tasks completed
    #34 · created Jun 04, 2021 by vmarques   enhancement
    • 2
    updated Jun 04, 2021
  • add documentation python script (description files)
    #35 · created Jun 04, 2021 by vmarques   documentation
    • CLOSED
    • 4
    updated Jun 21, 2021
  • taxonomic_assignment med_coastal lambda failed because nonetype object
    #36 · created Jun 07, 2021 by peguerin   bug
    • CLOSED
    • 3
    updated Jun 17, 2021
  • prepare_spygen enhancements ideas
    #37 · created Dec 01, 2021 by vmarques   enhancement
    • 0
    updated Dec 01, 2021