Issues · edna / snakemake_rapidrun_swarm

New issue

remove run or projet or sample using a file

#1 · created Feb 05, 2020 by peguerin enhancement
- CLOSED
- 1
updated Feb 06, 2020
demultiplexing steps: qual files

#2 · created Feb 05, 2020 by peguerin bug
- CLOSED
- 4
updated Feb 06, 2020
Issue when running the pipeline on santamarta

#3 · created Feb 12, 2020 by vmarques bug
- CLOSED
- 1
- 6
updated Jan 19, 2021
Ajouter base de ref custom

#4 · created Feb 13, 2020 by vmarques enhancement
- CLOSED
- 0
updated Jun 04, 2021
Change name files in 06_ folder

#5 · created Apr 16, 2020 by vmarques enhancement
- CLOSED
- 6
updated Jan 20, 2021
Erreur merging guadeloupe

#6 · created Apr 17, 2020 by vmarques bug
- CLOSED
- 5
updated Oct 09, 2020
Erreur lancement clustering

#7 · created Apr 24, 2020 by vmarques bug
- CLOSED
- 5
updated Apr 28, 2020
Documentation for singularity images

#8 · created Jul 07, 2020 by vmarques documentation
- 0
updated Jan 19, 2021
Ease the data download

#9 · created Oct 09, 2020 by vmarques enhancement
- CLOSED
- 1
updated Jan 19, 2021
Correct core usage demultiplex

#10 · created Dec 08, 2020 by vmarques bug
- 2
updated Jan 11, 2021
Re-write OTU_ py file python3

#11 · created Dec 16, 2020 by vmarques bug
- CLOSED
- 1
- 1
updated Jan 19, 2021
Simplify data export

#12 · created Dec 18, 2020 by vmarques enhancement
- CLOSED
- 1
updated Jan 20, 2021
add benchmarks

#13 · created Jan 12, 2021 by peguerin enhancement
- 0
updated Jan 12, 2021
add test unit

#14 · created Jan 12, 2021 by peguerin enhancement
- 4
updated Jan 19, 2021
subworkflow

#15 · created Jan 12, 2021 by peguerin enhancement
- CLOSED
- 0
updated Jan 19, 2021
projetmarker snakemake a un message warning à verifier

#16 · created Jan 19, 2021 by peguerin bug
- CLOSED
- 1
updated Jun 04, 2021
CLASSIC mode confuse {marker} and {run} wildcards

#17 · created Jan 19, 2021 by peguerin bug
- CLOSED
- 0
updated Jan 19, 2021
Installation instruction

#18 · created Jan 19, 2021 by peguerin documentation
- CLOSED
- 1
updated Jun 21, 2021
Test instruction

#19 · created Jan 19, 2021 by peguerin documentation
- CLOSED
- 1
updated Jun 21, 2021
CLASSIC mode tutorial

#20 · created Jan 19, 2021 by peguerin documentation
- 1
updated Nov 22, 2021
RAPIDRUN mode tutorial

#21 · created Jan 19, 2021 by peguerin documentation
- 0
updated Jan 19, 2021
deploy the workflow on ELIXIR cloud VM

#22 · created Jan 19, 2021 by peguerin enhancement
- 0
updated Jan 19, 2021
run snakemake on cluster Sun Grid Engine MBB

#23 · created Jan 19, 2021 by peguerin enhancement
- 0
updated Jan 19, 2021
probleme demultiplexing

#24 · created Feb 01, 2021 by peguerin bug
- CLOSED
- 0
updated Feb 11, 2021
error rule duplicate samples

#25 · created Feb 10, 2021 by vmarques bug
- CLOSED
- 4
updated Feb 22, 2021
soigner la presentation et la doc

#26 · created Feb 11, 2021 by peguerin documentation
- CLOSED
- 2
updated Jun 04, 2021
fastqc step

#27 · created Feb 19, 2021 by peguerin enhancement
- CLOSED
- 0
updated Feb 23, 2021
error running one project

#28 · created Feb 19, 2021 by vmarques bug
- CLOSED
- 3
updated Feb 22, 2021
error empty files all.fasta step 14 & 15

#29 · created Feb 22, 2021 by vmarques bug
- 1
updated Feb 22, 2021
error when running pipeline project

#31 · created Feb 27, 2021 by vmarques bug
- CLOSED
- 6
updated Jun 04, 2021
prepare spygen file - ameliorations 8 of 9 tasks completed

#32 · created Apr 21, 2021 by vmarques enhancement
- 4
updated Apr 22, 2021
Add multicore option for demultiplexing

#33 · created Jun 04, 2021 by vmarques enhancement
- CLOSED
- 4
updated Jun 04, 2021
simplify workflow to have less steps and less heavy intermediate results 2 of 4 tasks completed

#34 · created Jun 04, 2021 by vmarques enhancement
- 2
updated Jun 04, 2021
add documentation python script (description files)

#35 · created Jun 04, 2021 by vmarques documentation
- CLOSED
- 4
updated Jun 21, 2021
taxonomic_assignment med_coastal lambda failed because nonetype object

#36 · created Jun 07, 2021 by peguerin bug
- CLOSED
- 3
updated Jun 17, 2021
prepare_spygen enhancements ideas

#37 · created Dec 01, 2021 by vmarques enhancement
- 0
updated Dec 01, 2021