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Here is a version of the pipeline "only_obitools" using nextflow, a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data.
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eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG
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Here is a version of the pipeline "only_obitools" using snakemake workflow management system.
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MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data
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