Explore projects
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MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data
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Source code to fit a competitive Lotka-Volterra Model to tri-specific time series (using Rstan).
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This project aims to compare twelve bioinformatics pipelines based on five existing metabarcoding programs to make recommendations for data management in intraspecific variability studies using environmental DNA.
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edna / snakemake_rapidrun_obitools
MIT LicenseDNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
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Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design
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number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species
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Visualization of the specificity of designed primers with mismatch plot
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a shiny application to query information about our metabarcoding data
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A shiny app that use esquisse package to quickly draw simple graphics with ggplot2 R package.
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