Explore projects

Global determinants of freshwater and marine fish genetic diversity

MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data

This repository is an adaptation of the poolDiffCNV repo. (https://github.com/andrewkern/poolDiffCNV).

A web interface to design and run workflows as part of MBB-workflows framework

SaltStack formula to get process in D states.

design primers for intrapopulation metabarcoding

This project aims to compare twelve bioinformatics pipelines based on five existing metabarcoding programs to make recommendations for data management in intraspecific variability studies using environmental DNA.

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Collection of scripts to build a reference database.

Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design

number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species