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Tool to check if a new version of an R package (you might be developing) breaks any package which depends on it.

Bash script and optional simple web interface to run R CMD CHECK on every package that depends on the package to test.

eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG

A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification

TP RocksCluster janvier 2016

A collection of scripts used to do genome assemblies from raw sequencing data

R Package Container Image Builder

Collections of mitogenome assembly methods from whole genome sequencing data

Workflow Application Wrapper

Here we go again to investigate genetic diversity patterns at different scale

This project permits to check the specificity of already designed primers.

Check WGS data

A workflow designed to clean SINGLE-END fastq files

Here is a version of the pipeline "only_obitools" using snakemake workflow management system.

The first step to begin with obitools and Bash