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mirror of modulefiles repository on gitlabpriv (but there is no reason to let this repository in a private state)
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Here is a version of the pipeline "only_obitools" using nextflow, a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data.
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Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"
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This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.
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edna / snakemake_rapidrun_swarm
MIT LicenseOTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE
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This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.
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lxdsingu / atelier-lxdsingu
Creative Commons Zero v1.0 UniversalUpdated -
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iago-lito / DECX
GNU General Public License v3.0 or laterUpdated -
A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification
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