Explore projects

SaltStack check_disks formula.

Used by jsonreader2.

Rscripts and link to our server to download and assign environmental data to sample according to their coordinates

mirror of modulefiles repository on gitlabpriv (but there is no reason to let this repository in a private state)

GSSA

Code used by https://mbb.univ-montp2.fr/MBB/dnabushmeat

Data for the tutorial on how to analyze DNA metabarcoding data produced on Illumina sequencers

Here, we reproduce the bioinformatics pipeline used by SPYGEN to generate species environmental presence from raw eDNA data.

Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.

Here is a version of the pipeline "only_obitools" using nextflow, a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data.

Analysis around palinurus ortus

This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.

Some basic tests to check websites :

https certificates, checksum of the index web page, HTTP answers.

This project is aimed at providing a list of "Ethical' journals where ISEM's researchers are used to publishing there works.