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Public copy from internal jsonreader2 project Jsonreader2 is a PHP Web parser for JSON files mainly used for SaltStack reporting.

Check available resources on mitochondrion and assembly

A way to setup LDAP synchronization fastly from a debian-like distro.

SaltStack check_disks formula.

Used by jsonreader2.

Rscripts and link to our server to download and assign environmental data to sample according to their coordinates

Data for the tutorial on how to analyze DNA metabarcoding data produced on Illumina sequencers

Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.

Analysis around palinurus ortus

This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.

Some basic tests to check websites :

https certificates, checksum of the index web page, HTTP answers.

This project is aimed at providing a list of "Ethical' journals where ISEM's researchers are used to publishing there works.

Seek positions of variants onto genome and check if they are on an annotated region e.g. coding region. Then seek the proteic function of the gene

This project presents a pipeline based on OBITools commands in order to eliminate sequences interpreted as coming from PCR errors and to assign each remaining sequence to a taxon thanks to a reference database.