Explore projects

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Scripts to prepare SNP data for analysis

Understand the NCBI database and to do request using entrez and Rentrez

A version of radsex that can deal with indexed reads.

gitbooks des formations et toutes les documentations publiques

Visualization of the specificity of designed primers with mismatch plot

A shiny app that use esquisse package to quickly draw simple graphics with ggplot2 R package.

a shiny application to query information about our metabarcoding data

metabarcoding test data for snakemake rapidrun workflow

data test to check metabarcoding workflow processing

number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species

Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design