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Check available resources on mitochondrion and assembly
A way to setup LDAP synchronization fastly from a debian-like distro.
Rscripts and link to our server to download and assign environmental data to sample according to their coordinates
SaltStack check_disks formula.
Used by jsonreader2.
Here, we reproduce the bioinformatics pipeline used by
SPYGEN to generate species environmental presence from raw eDNA data.
Data for the tutorial on how to analyze DNA metabarcoding data produced on Illumina sequencers
Here is a version of the pipeline "only_obitools" using nextflow, a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data.
Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"
This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.
This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.
Analysis around palinurus ortus
This project presents a pipeline based on OBITools commands in order to eliminate sequences interpreted as coming from PCR errors and to assign each remaining sequence to a taxon thanks to a reference database.
système expert de choix d’un modèle halieutique de production comportant une variable environnementale, puis ajustement et validation statistique du modèle.
Creative Commons Zero v1.0 Universal
This project is aimed at providing a list of "Ethical' journals where ISEM's researchers are used to publishing there works.