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Tool to check if a new version of an R package (you might be developing) breaks any package which depends on it.

Bash script and optional simple web interface to run R CMD CHECK on every package that depends on the package to test.

Fork-type Parallel computing with R

esthievo

A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification

A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification

GSSA

Gillepsie SSA

A collection of scripts used to do genome assemblies from raw sequencing data

mandrill

Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"

Source code to fit a competitive Lotka-Volterra Model to tri-specific time series (using Rstan).

MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data

This workflow will use a pseudo aligner (Kallisto or Salmon) to quantify transcript abundance and test for differential expression.