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Tool to check if a new version of an R package (you might be developing) breaks any package which depends on it.
Bash script and optional simple web interface to run R CMD CHECK on every package that depends on the package to test.
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A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification
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lxdsingu / atelier-lxdsingu
Creative Commons Zero v1.0 UniversalUpdated -
A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification
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Here is a version of the pipeline "only_obitools" using nextflow, a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data.
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remy / ldap_synchro
BSD 3-Clause "New" or "Revised" LicenseA way to setup LDAP synchronization fastly from a debian-like distro.
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eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG
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Collections of mitogenome assembly methods from whole genome sequencing data
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A collection of scripts used to do genome assemblies from raw sequencing data
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Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"
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GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.
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MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data
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Comparison of multiple bioinformatic programs for each step of eDNA analysis
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Simulations of metabarcoding data from fish 12S Teleo1
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