Explore projects

Seek positions of variants onto genome and check if they are on an annotated region e.g. coding region. Then seek the proteic function of the gene

Collections of mitogenome assembly methods from whole genome sequencing data

MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data

eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG

Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"

The first step to begin with obitools and Bash

Comparison of multiple bioinformatic programs for each step of eDNA analysis

This project is aimed at providing a list of "Ethical' journals where ISEM's researchers are used to publishing there works.

SaltStack check_disks formula.

Used by jsonreader2.

A workflow designed to clean SINGLE-END fastq files

A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification

A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification

This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.

Scripts to prepare SNP data for analysis

GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.