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remy / OrthoFinder
GNU General Public License v3.0 onlyUpdated -
This repository is an adaptation of the poolDiffCNV repo. (https://github.com/andrewkern/poolDiffCNV).
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This workflow will use a pseudo aligner (Kallisto or Salmon) to quantify transcript abundance and test for differential expression.
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Here is a version of the pipeline "only_obitools" using snakemake workflow management system.
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edna / snakemake_rapidrun_obitools
MIT LicenseDNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
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peguerin / snakemake_rapidrun_obitools
MIT LicenseDNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
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aduhamet / snakemake_rapidrun_obitools
MIT LicenseDNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
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edna / snakemake_rapidrun_swarm
MIT LicenseOTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE
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number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species
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