Explore projects

TP RocksCluster janvier 2016

Shiny App Generator

Here is a version of the pipeline "only_obitools" using snakemake workflow management system.

Global determinants of freshwater and marine fish genetic diversity

Collection of scripts to build a reference database.

MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data

Workflow Application Wrapper

eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG

Web Interface for COntainer PAckaging.

This Web application allows people to generate Singularity recipe or Dockerfiles from a Web User Interface.

A collection of scripts used to do genome assemblies from raw sequencing data

A workflow designed to clean SINGLE-END fastq files

Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"

number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species

From https://github.com/davidemms/OrthoFinder

This workflow will use a pseudo aligner (Kallisto or Salmon) to quantify transcript abundance and test for differential expression.