Explore projects

eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG

A workflow designed to clean SINGLE-END fastq files

A collection of scripts used to do genome assemblies from raw sequencing data

Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"

MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data

Comparison of multiple bioinformatic programs for each step of eDNA analysis

This workflow will use a pseudo aligner (Kallisto or Salmon) to quantify transcript abundance and test for differential expression.

Global determinants of freshwater and marine fish genetic diversity

TP RocksCluster janvier 2016

From https://github.com/davidemms/OrthoFinder

This repository is an adaptation of the poolDiffCNV repo. (https://github.com/andrewkern/poolDiffCNV).

This fork implements two optimization functions : optimize_anneal and optimize_dual_anneal

Here we go again to investigate genetic diversity patterns at different scale