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Shiny App Generator
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Here is a version of the pipeline "only_obitools" using snakemake workflow management system.
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Global determinants of freshwater and marine fish genetic diversity
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Formation R + git + Rmd
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MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data
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Workflow Application Wrapper
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Here is a version of the pipeline "only_obitools" using nextflow, a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data.
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eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG
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Rscripts and link to our server to download and assign environmental data to sample according to their coordinates
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Web Interface for COntainer PAckaging.
This Web application allows people to generate Singularity recipe or Dockerfiles from a Web User Interface.
Singularity Docker recipe+ 2 more -
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Gillepsie SSA
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GSSA
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A collection of scripts used to do genome assemblies from raw sequencing data
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mandrill
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Collections of mitogenome assembly methods from whole genome sequencing data