Explore projects

Here is a version of the pipeline "only_obitools" using snakemake workflow management system.

Global determinants of freshwater and marine fish genetic diversity

Collection of scripts to build a reference database.

Formation R + git + Rmd

MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data

Workflow Application Wrapper

Here is a version of the pipeline "only_obitools" using nextflow, a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data.

eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG

Rscripts and link to our server to download and assign environmental data to sample according to their coordinates

Web Interface for COntainer PAckaging.

This Web application allows people to generate Singularity recipe or Dockerfiles from a Web User Interface.

Gillepsie SSA

GSSA

A collection of scripts used to do genome assemblies from raw sequencing data

mandrill

Singularity Container Registry made by BEV team

Collections of mitogenome assembly methods from whole genome sequencing data

An approach to identify genetic boundaries between populations using individual spatial co-ordinates and unlinked codominant markers.