GitLab

Singularity Container Registry made by BEV team

A tool designed to provide preprocessing for FASTQ files. This tool is developed in C++

A workflow designed to clean SINGLE-END fastq files

A collection of scripts used to do genome assemblies from raw sequencing data

mandrill

Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"

Source code to fit a competitive Lotka-Volterra Model to tri-specific time series (using Rstan).

GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.

MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data

Comparison of multiple bioinformatic programs for each step of eDNA analysis

Simulations of metabarcoding data from fish 12S Teleo1

This workflow will use a pseudo aligner (Kallisto or Salmon) to quantify transcript abundance and test for differential expression.

Global determinants of freshwater and marine fish genetic diversity