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number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species
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OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE
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DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
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DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
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DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
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metabarcoding test data for snakemake rapidrun workflow
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Here is a version of the pipeline "only_obitools" using snakemake workflow management system.
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Formulas for our local clusters.
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Analysis around palinurus ortus
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A SaltStack formula to setup roles and pool grains based on the subnet(s) and hostname.
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Required dependencies for the Seascape genomics class.
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Shiny App Generator
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R Package Container Image Builder
