Explore projects

A web interface to design and run workflows as part of MBB-workflows framework

number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

metabarcoding test data for snakemake rapidrun workflow

Here is a version of the pipeline "only_obitools" using snakemake workflow management system.

Singularity Container Registry made by BEV team

Formulas for our local clusters.

Analysis around palinurus ortus

A SaltStack formula to setup roles and pool grains based on the subnet(s) and hostname.

Required dependencies for the Seascape genomics class.