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This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.

Required dependencies for the Seascape genomics class.

A shiny app that use esquisse package to quickly draw simple graphics with ggplot2 R package.

The first step to begin with obitools and Bash

This fork implements two optimization functions : optimize_anneal and optimize_dual_anneal

Data for the tutorial on how to analyze DNA metabarcoding data produced on Illumina sequencers

Check WGS data

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

système expert de choix d’un modèle halieutique de production comportant une variable environnementale, puis ajustement et validation statistique du modèle.

Tool to parse and summarize VFC files with different plots

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE