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Here is a version of the pipeline "only_obitools" using snakemake workflow management system.
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Understand the NCBI database and to do request using entrez and Rentrez
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aduhamet / snakemake_rapidrun_obitools
MIT LicenseDNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
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Using Git in a team: learn and practice Git and discover its features !
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This project presents a pipeline based on OBITools commands in order to eliminate sequences interpreted as coming from PCR errors and to assign each remaining sequence to a taxon thanks to a reference database.
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This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.
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