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R Package Container Image Builder

This workflow will use a pseudo aligner (Kallisto or Salmon) to quantify transcript abundance and test for differential expression.

Fork-type Parallel computing with R

Tool to check if a new version of an R package (you might be developing) breaks any package which depends on it.

Bash script and optional simple web interface to run R CMD CHECK on every package that depends on the package to test.

a shiny application to query information about our metabarcoding data

Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design

Visualization of the specificity of designed primers with mismatch plot

design primers for intrapopulation metabarcoding

Understand the NCBI database and to do request using entrez and Rentrez