Explore projects
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Here we go again to investigate genetic diversity patterns at different scale
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edna / snakemake_rapidrun_swarm
MIT LicenseOTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE
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edna / snakemake_rapidrun_obitools
MIT LicenseDNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
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A shiny app that use esquisse package to quickly draw simple graphics with ggplot2 R package.
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This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.
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Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design
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a shiny application to query information about our metabarcoding data
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Understand the NCBI database and to do request using entrez and Rentrez
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Using Git in a team: learn and practice Git and discover its features !
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Seek positions of variants onto genome and check if they are on an annotated region e.g. coding region. Then seek the proteic function of the gene
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Visualization of the specificity of designed primers with mismatch plot
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