Explore projects
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Visualization of the specificity of designed primers with mismatch plot
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Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design
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edna / Quarto Create Dada2 Ref Database
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a shiny application to query information about our metabarcoding data
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Tool to check if a new version of an R package (you might be developing) breaks any package which depends on it.
Bash script and optional simple web interface to run R CMD CHECK on every package that depends on the package to test.
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This workflow will use a pseudo aligner (Kallisto or Salmon) to quantify transcript abundance and test for differential expression.
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edna / snakemake_rapidrun_obitools
MIT LicenseDNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
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edna / snakemake_rapidrun_swarm
MIT LicenseOTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE
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number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species
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