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Understand the NCBI database and to do request using entrez and Rentrez
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This project permits to check the specificity of already designed primers.
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Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design
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This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.
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This project presents a pipeline based on OBITools commands in order to eliminate sequences interpreted as coming from PCR errors and to assign each remaining sequence to a taxon thanks to a reference database.
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This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.
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Data for the tutorial on how to analyze DNA metabarcoding data produced on Illumina sequencers
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edna / snakemake_rapidrun_obitools
MIT LicenseDNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
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edna / snakemake_rapidrun_swarm
MIT LicenseOTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE
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Simulations of metabarcoding data from fish 12S Teleo1
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Comparison of multiple bioinformatic programs for each step of eDNA analysis
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remy / website_checks
MIT LicenseSome basic tests to check websites :
https certificates, checksum of the index web page, HTTP answers.Updated