Explore projects

SaltStack check_disks formula.

Used by jsonreader2.

A version of radsex that can deal with indexed reads.

Scripts to prepare SNP data for analysis

Seek positions of variants onto genome and check if they are on an annotated region e.g. coding region. Then seek the proteic function of the gene

This project is aimed at providing a list of "Ethical' journals where ISEM's researchers are used to publishing there works.

Some basic tests to check websites :

https certificates, checksum of the index web page, HTTP answers.

Analysis around palinurus ortus

This project permits to check the specificity of already designed primers.

This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design

number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species

This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.

This project presents a pipeline based on OBITools commands in order to eliminate sequences interpreted as coming from PCR errors and to assign each remaining sequence to a taxon thanks to a reference database.

data test to check metabarcoding workflow processing

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Understand the NCBI database and to do request using entrez and Rentrez