This project is aimed at providing a list of "Ethical' journals where ISEM's researchers are used to publishing there works.
Analysis around palinurus ortus
DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
Seek positions of variants onto genome and check if they are on an annotated region e.g. coding region. Then seek the proteic function of the gene
data test to check metabarcoding workflow processing
Understand the NCBI database and to do request using entrez and Rentrez
This project permits to check the specificity of already designed primers.
Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design
This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.
This project presents a pipeline based on OBITools commands in order to eliminate sequences interpreted as coming from PCR errors and to assign each remaining sequence to a taxon thanks to a reference database.
This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.
Tool to parse and summarize VFC files with different plots
Here we go again to investigate genetic diversity patterns at different scale
Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"
Simulations of metabarcoding data from fish 12S Teleo1