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OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

Simulations of metabarcoding data from fish 12S Teleo1

Comparison of multiple bioinformatic programs for each step of eDNA analysis

Some basic tests to check websites :

https certificates, checksum of the index web page, HTTP answers.

Here we go again to investigate genetic diversity patterns at different scale

This repository is an adaptation of the poolDiffCNV repo. (https://github.com/andrewkern/poolDiffCNV).

GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.

This workflow will use a pseudo aligner (Kallisto or Salmon) to quantify transcript abundance and test for differential expression.

Codes for the paper : "Genomic resources for Mediterranean fishes"