Explore projects

This repository is an adaptation of the poolDiffCNV repo. (https://github.com/andrewkern/poolDiffCNV).

Here we go again to investigate genetic diversity patterns at different scale

Comparison of multiple bioinformatic programs for each step of eDNA analysis

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

This fork implements two optimization functions : optimize_anneal and optimize_dual_anneal

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

data test to check metabarcoding workflow processing

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

scripts to create our own reference database with our own sequences only and using the NCBI taxonomy