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Here we go again to investigate genetic diversity patterns at different scale

This repository is an adaptation of the poolDiffCNV repo. (https://github.com/andrewkern/poolDiffCNV).

This workflow will use a pseudo aligner (Kallisto or Salmon) to quantify transcript abundance and test for differential expression.

From https://github.com/davidemms/OrthoFinder

number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species

Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"

A workflow designed to clean SINGLE-END fastq files