Here we go again to investigate genetic diversity patterns at different scale
This repository is an adaptation of the poolDiffCNV repo. (https://github.com/andrewkern/poolDiffCNV).
This workflow will use a pseudo aligner (Kallisto or Salmon) to quantify transcript abundance and test for differential expression.
number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species
Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"
A workflow designed to clean SINGLE-END fastq files