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This workflow will use a pseudo aligner (Kallisto or Salmon) to quantify transcript abundance and test for differential expression.

Collection of scripts to build a reference database.

This repository is an adaptation of the poolDiffCNV repo. (https://github.com/andrewkern/poolDiffCNV).

From https://github.com/davidemms/OrthoFinder

Fork to change files copying to simple links

A collection of scripts used to do genome assemblies from raw sequencing data

Code used by https://mbb.univ-montp2.fr/MBB/dnabushmeat