Analysis around palinurus ortus
Check available resources on mitochondrion and assembly
metabarcoding test data for snakemake rapidrun workflow
How to design a primer ?
Visualization of the specificity of designed primers with mismatch plot
Code used by https://mbb.univ-montp2.fr/MBB/dnabushmeat
scripts to create our own reference database with our own sequences only and using the NCBI taxonomy
DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
mirror of modulefiles repository on gitlabpriv (but there is no reason to let this repository in a private state)
Seek positions of variants onto genome and check if they are on an annotated region e.g. coding region. Then seek the proteic function of the gene
Using Git in a team: learn and practice Git and discover its features !
data test to check metabarcoding workflow processing
Understand the NCBI database and to do request using entrez and Rentrez
This project permits to check the specificity of already designed primers.
Ceci est un dépôt exemple pour git.
a shiny application to query information about our metabarcoding data