Explore projects

Analysis around palinurus ortus

Check available resources on mitochondrion and assembly

Say hello

metabarcoding test data for snakemake rapidrun workflow

How to design a primer ?

Visualization of the specificity of designed primers with mismatch plot

Code used by https://mbb.univ-montp2.fr/MBB/dnabushmeat

scripts to create our own reference database with our own sequences only and using the NCBI taxonomy

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

mirror of modulefiles repository on gitlabpriv (but there is no reason to let this repository in a private state)

Seek positions of variants onto genome and check if they are on an annotated region e.g. coding region. Then seek the proteic function of the gene

Using Git in a team: learn and practice Git and discover its features !

data test to check metabarcoding workflow processing

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Understand the NCBI database and to do request using entrez and Rentrez

This project permits to check the specificity of already designed primers.

Ceci est un dépôt exemple pour git.

a shiny application to query information about our metabarcoding data