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scripts to create our own reference database with our own sequences only and using the NCBI taxonomy
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This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.
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This fork implements two optimization functions : optimize_anneal and optimize_dual_anneal
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Scripts to prepare SNP data for analysis
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GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.
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gitbooks des formations et toutes les documentations publiques
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This project aims to compare twelve bioinformatics pipelines based on five existing metabarcoding programs to make recommendations for data management in intraspecific variability studies using environmental DNA.
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Rscripts and link to our server to download and assign environmental data to sample according to their coordinates
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esthievo
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Formation R + git + Rmd
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An approach to identify genetic boundaries between populations using individual spatial co-ordinates and unlinked codominant markers.
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genepop
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A collection of scripts used to do genome assemblies from raw sequencing data