GitLab

scripts to create our own reference database with our own sequences only and using the NCBI taxonomy

This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.

This fork implements two optimization functions : optimize_anneal and optimize_dual_anneal

Scripts to prepare SNP data for analysis

GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.

Code used by https://mbb.univ-montp2.fr/MBB/dnabushmeat

gitbooks des formations et toutes les documentations publiques

This project aims to compare twelve bioinformatics pipelines based on five existing metabarcoding programs to make recommendations for data management in intraspecific variability studies using environmental DNA.

Rscripts and link to our server to download and assign environmental data to sample according to their coordinates

esthievo

A tool designed to provide preprocessing for FASTQ files. This tool is developed in C++

Formation R + git + Rmd

An approach to identify genetic boundaries between populations using individual spatial co-ordinates and unlinked codominant markers.

genepop

A collection of scripts used to do genome assemblies from raw sequencing data