GitLab

Fork-type Parallel computing with R

MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data

Formation R + git + Rmd

Here, we reproduce the bioinformatics pipeline used by SPYGEN to generate species environmental presence from raw eDNA data.

Global determinants of freshwater and marine fish genetic diversity

A collection of scripts used to do genome assemblies from raw sequencing data

Here is a version of the pipeline "only_obitools" using nextflow, a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data.

Gillepsie SSA

eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG

Rscripts and link to our server to download and assign environmental data to sample according to their coordinates

Singularity Container Registry made by BEV team

Collections of mitogenome assembly methods from whole genome sequencing data

A workflow designed to clean SINGLE-END fastq files