Explore projects

Understand the NCBI database and to do request using entrez and Rentrez

This project permits to check the specificity of already designed primers.

Ceci est un dépôt exemple pour git.

a shiny application to query information about our metabarcoding data

Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design

This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.

This project presents a pipeline based on OBITools commands in order to eliminate sequences interpreted as coming from PCR errors and to assign each remaining sequence to a taxon thanks to a reference database.

This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.

Required dependencies for the Seascape genomics class.

A shiny app that use esquisse package to quickly draw simple graphics with ggplot2 R package.

The first step to begin with obitools and Bash

This fork implements two optimization functions : optimize_anneal and optimize_dual_anneal

Data for the tutorial on how to analyze DNA metabarcoding data produced on Illumina sequencers

Check WGS data