GitLab

GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.

A collection of scripts used to do genome assemblies from raw sequencing data

Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design

number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species

A tool designed to provide preprocessing for FASTQ files. This tool is developed in C++

data test to check metabarcoding workflow processing

gitbooks des formations et toutes les documentations publiques

metabarcoding test data for snakemake rapidrun workflow

a shiny application to query information about our metabarcoding data

A shiny app that use esquisse package to quickly draw simple graphics with ggplot2 R package.

Visualization of the specificity of designed primers with mismatch plot

A version of radsex that can deal with indexed reads.