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Tool to check if a new version of an R package (you might be developing) breaks any package which depends on it.

Bash script and optional simple web interface to run R CMD CHECK on every package that depends on the package to test.

gitbooks des formations et toutes les documentations publiques

TP RocksCluster janvier 2016

A way to setup LDAP synchronization fastly from a debian-like distro.

A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification

A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification

R Package Container Image Builder

Here, we reproduce the bioinformatics pipeline used by SPYGEN to generate species environmental presence from raw eDNA data.

Here is a version of the pipeline "only_obitools" using snakemake workflow management system.

Global determinants of freshwater and marine fish genetic diversity

Collection of scripts to build a reference database.

MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data

Workflow Application Wrapper

Here is a version of the pipeline "only_obitools" using nextflow, a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data.

eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG

Rscripts and link to our server to download and assign environmental data to sample according to their coordinates