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Check available resources on mitochondrion and assembly

gitbooks des formations et toutes les documentations publiques

Public copy from internal jsonreader2 project Jsonreader2 is a PHP Web parser for JSON files mainly used for SaltStack reporting.

A web interface to design and run workflows as part of MBB-workflows framework

Here is a version of the pipeline "only_obitools" using snakemake workflow management system.

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG

Here, we reproduce the bioinformatics pipeline used by SPYGEN to generate species environmental presence from raw eDNA data.

MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data

Here is a version of the pipeline "only_obitools" using nextflow, a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data.

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

This project aims to compare twelve bioinformatics pipelines based on five existing metabarcoding programs to make recommendations for data management in intraspecific variability studies using environmental DNA.

Collection of scripts to build a reference database.

Workflow Application Wrapper

SaltStack check_disks formula.

Used by jsonreader2.