Explore projects

This workflow will use a pseudo aligner (Kallisto or Salmon) to quantify transcript abundance and test for differential expression.

Comparison of multiple bioinformatic programs for each step of eDNA analysis

Codes for the paper : "Genomic resources for Mediterranean fishes"

Some basic tests to check websites :

https certificates, checksum of the index web page, HTTP answers.

Seek positions of variants onto genome and check if they are on an annotated region e.g. coding region. Then seek the proteic function of the gene

This project is aimed at providing a list of "Ethical' journals where ISEM's researchers are used to publishing there works.

This project presents a pipeline based on OBITools commands in order to eliminate sequences interpreted as coming from PCR errors and to assign each remaining sequence to a taxon thanks to a reference database.

Analysis around palinurus ortus

This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.

Simulations of metabarcoding data from fish 12S Teleo1

Public copy from internal jsonreader2 project Jsonreader2 is a PHP Web parser for JSON files mainly used for SaltStack reporting.

A way to setup LDAP synchronization fastly from a debian-like distro.

Check available resources on mitochondrion and assembly

Rscripts and link to our server to download and assign environmental data to sample according to their coordinates

SaltStack check_disks formula.

Used by jsonreader2.

Data for the tutorial on how to analyze DNA metabarcoding data produced on Illumina sequencers