Explore projects

MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data

eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG

Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"

Comparison of multiple bioinformatic programs for each step of eDNA analysis

A workflow designed to clean SINGLE-END fastq files

scripts to create our own reference database with our own sequences only and using the NCBI taxonomy

This fork implements two optimization functions : optimize_anneal and optimize_dual_anneal

Code used by https://mbb.univ-montp2.fr/MBB/dnabushmeat

A collection of scripts used to do genome assemblies from raw sequencing data

Fork to change files copying to simple links