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Web Interface for COntainer PAckaging.

This Web application allows people to generate Singularity recipe or Dockerfiles from a Web User Interface.

eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG

A workflow designed to clean SINGLE-END fastq files

TP RocksCluster janvier 2016

A collection of scripts used to do genome assemblies from raw sequencing data

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Workflow Application Wrapper

Here we go again to investigate genetic diversity patterns at different scale

Fork to change files copying to simple links

scripts to create our own reference database with our own sequences only and using the NCBI taxonomy

Here is a version of the pipeline "only_obitools" using snakemake workflow management system.

Global determinants of freshwater and marine fish genetic diversity

MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data

This repository is an adaptation of the poolDiffCNV repo. (https://github.com/andrewkern/poolDiffCNV).