GitLab

Tool to check if a new version of an R package (you might be developing) breaks any package which depends on it.

Bash script and optional simple web interface to run R CMD CHECK on every package that depends on the package to test.

Fork-type Parallel computing with R

esthievo

A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification

A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification

Here, we reproduce the bioinformatics pipeline used by SPYGEN to generate species environmental presence from raw eDNA data.

Here is a version of the pipeline "only_obitools" using nextflow, a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data.

A way to setup LDAP synchronization fastly from a debian-like distro.

GSSA

Gillepsie SSA

An approach to identify genetic boundaries between populations using individual spatial co-ordinates and unlinked codominant markers.

eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG

Collections of mitogenome assembly methods from whole genome sequencing data