Explore projects

gitbooks des formations et toutes les documentations publiques

Check available resources on mitochondrion and assembly

Formation R + git + Rmd

Public copy from internal jsonreader2 project Jsonreader2 is a PHP Web parser for JSON files mainly used for SaltStack reporting.

A web interface to design and run workflows as part of MBB-workflows framework

Here is a version of the pipeline "only_obitools" using snakemake workflow management system.

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

mirror of modulefiles repository on gitlabpriv (but there is no reason to let this repository in a private state)

eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG

Here, we reproduce the bioinformatics pipeline used by SPYGEN to generate species environmental presence from raw eDNA data.

MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data

Here is a version of the pipeline "only_obitools" using nextflow, a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data.