gitbooks des formations et toutes les documentations publiques
Check available resources on mitochondrion and assembly
Formation R + git + Rmd
Public copy from internal jsonreader2 project
Jsonreader2 is a PHP Web parser for JSON files mainly used for SaltStack reporting.
A web interface to design and run workflows as part of MBB-workflows framework
Here is a version of the pipeline "only_obitools" using snakemake workflow management system.
DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
mirror of modulefiles repository on gitlabpriv (but there is no reason to let this repository in a private state)
eDNA paired-end data analysis with assembly/demultiplexing tasks proceeded by VSEARCH/CUTADAPT and taxonomic assignation with ECOTAG
Here, we reproduce the bioinformatics pipeline used by SPYGEN to generate species environmental presence from raw eDNA data.
MOTU clustering and taxonomic assignation using SWARM method from eDNA NGS raw data
Here is a version of the pipeline "only_obitools" using nextflow, a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data.