OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE
DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
Collection of scripts to build a reference database.
scripts to create our own reference database with our own sequences only and using the NCBI taxonomy
Workflow Application Wrapper
Shiny App Generator
Code used by https://mbb.univ-montp2.fr/MBB/dnabushmeat
data test to check metabarcoding workflow processing
Here we go again to investigate genetic diversity patterns at different scale
Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"