Explore projects

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Collection of scripts to build a reference database.

scripts to create our own reference database with our own sequences only and using the NCBI taxonomy

Workflow Application Wrapper

Shiny App Generator

Code used by https://mbb.univ-montp2.fr/MBB/dnabushmeat

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

data test to check metabarcoding workflow processing

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Here we go again to investigate genetic diversity patterns at different scale

Codes Pierre-Edouard Guerin wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"