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Update How to guide
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Sep 04, 2022
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## Define a root t
o buil
d the taxonomy tree
## Define a root t
axon from which to loa
d the taxonomy tree
By default, MKBDR load the NCBI taxonomy tree using "vertebrae" as a root taxon ( Taxon ID = 7742).
By default, MKBDR load the NCBI taxonomy tree using "vertebrae" as a root taxon ( Taxon ID = 7742)
covering only vertabrates taxonomy
.
It is possible to define a different root taxon to load the taxonomy tree using the option
`--root_ncbi_taxon_id`
.
For instance if you are working on plants, you can use the node "Viriplantae" (Taxon ID = 33090) as a root to load your ncbi taxonomy tree.
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